新加坡博士后招聘-新加坡科技研究局-开发并创建综合数据库

发布时间：2020/7/16 15:11:37

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如有招聘信息发布(博士/博后/访学)可联系

邮箱：cxw@med.tj.cn

微信：shelver888

公众号链接：https://mp.weixin.qq.com/s?__biz=MzU5NTk2OTE2Mw==&mid=2247485559&idx=1&sn=a6cb9ba262a89073979f8aaf4bc224eb&chksm=fe689d93c91f1485c2bdc2245078329c2f89aa687bf1925599401f8121ead4abac6929041d7f&token=1998170454&lang=zh_CN#rd

单位：新加坡科技研究局 Agency for Science,Technology and Research,A*STAR

部门：Genome Institute of Singapore (GIS)

教授： Dr Shyam Prabhakar & Dr Nicolas Bertin

申请邮箱：prabhakars@gis.a-star.edu.sg  & Nicolas_Bertin@gis.a-star.edu.sg

截止日期：July 24, 2020

介绍

新加坡基因组研究所（GIS）为DevOps工程师提供了令人兴奋的机会——加入人口规模基因组计划，该计划旨在创建一个具有综合遗传，临床和生活方式数据的综合数据库。在试点阶段，这项工作已完成了1万个人的全基因组测序，并提供了三个族群中常见遗传变异的目录（Wu D.等，2019）。现在，挑战在于将遗传数据的规模进一步扩大到10万个人。通过加入我们的跨学科团队，您将参与建立高通量数据分析工作流，设计用于管理和控制对PB级信息访问的解决方案，并最终使用开发的工具来呈现目前新加坡最大数量的人口基因组学工作。

职责

设计，开发和实施高效的工作流程，以分析高通量测序实验的结果

范围确定并提供各种用于基因组数据处理和分析的大数据解决方案

构建以云端为基础的平台，以便轻松开发新应用程序

开发和维护用于安全共享基因组数据的API

实施标准和最佳实践，包括性能，安全性，可伸缩性和可维护性

编写技术文档并就生产设置的各个方面进行内部培训

与团队成员协调以收集用户需求并反馈以改进当前的工具

履行分配的其他职责

要求 

计算机科学，计算生物学或相关专业的博士学位，理学硕士或同等学历

精通Python和标准代码开发实践（单元测试，软件版本控制，持续集成）

具有云计算环境（AWS，Azure，GCP）的工作经验，以及云端构建大型数据基础架构（ECS，Mesos，Docker）的工作经验

熟悉大数据技术（Hadoop，Hive，Spark，ES）

具有Web应用程序开发经验（后端和前端），REST API和API安全性（OAuth）

非常注重细节和能够解决问题

较强的沟通能力、团队合作能力

能够在工作中快速学习

熟悉高通量测序数据分析者优先考虑

进一步咨询，可以联系c-big@gis.a-star.edu.sg

申请

申请时，请将您的简历和推荐人姓名通过电子邮件发送给：Shyam Prabhakar博士，电子邮件：prabhakars@gis.a-star.edu.sg和Nicolas Bertin博士，电子邮件：Nicolas_Bertin@gis.a-star.edu.sg

Job description

The Genome Institute of Singapore (GIS) has an exciting opportunity for a DevOps Engineer to join a population-scale genomics initiative that aims to create a comprehensive data bank with integrated genetic, clinical and lifestyle data. In its pilot phase, this effort has completed whole-genome sequencing of 10K individuals, and has delivered a catalogue of common genetic variants across three ethnic populations (Wu D. et al. 2019). Now, the challenge is to scale up genetic data production to a further 100K individuals. By joining our multi-disciplinary team, you will be involved in efforts to set up a high-throughput data analysis workflow, devise solutions for managing and controlling access to petabytes of information, and eventually apply the developed tools to deliver one of the largest population genomics efforts in Singapore to date.

Responsibilities

• Design, develop and implement an efficient workflow for analysing results from high-throughput sequencing experiments

• Scope and deliver various Big Data solutions for genomic data processing and analytics

• Build a cloud-based platform that allows easy development of new applications

• Develop and maintain APIs for secure sharing of genomic data

• Implement standards and best practices, including performance, security, scalability, and maintainability

• Write technical documentation and deliver internal training on various aspects of the production set up

• Coordinate with team members to collect user requirements and feedback in order to improve the current tools

• Perform other duties as assigned

About the Organisation

The Genome Institute of Singapore (GIS), A*STAR Research Entities is the national flagship program for genomic science in Singapore. GIS is located within the Biopolis, the biomedical research of hub of Singapore, which houses in close proximity research institutes under the Agency of Science, Technology and Research (A*STAR), biotech startups and international pharmaceutical corporations. The applicant would have the opportunity to interact with scientists, bioinformaticians, clinicians, engineers and other professionals from all over the world in a vibrant, intellectually stimulating and scientifically curious setting. You will be part of a thriving scientific community where you will have the opportunity to share your ideas and demonstrate your skills and passion for scientific research.  You can find out more about the Genome Institute of Singapore online: https://www.a-star.edu.sg/gis/.

Why Singapore?

Singapore, a city-state with one of the highest standards of living in the world, is an international hub for the biomedical sciences. Singapore is a tropical city with a rich Asian heritage and a modern style of living, and is an ideal gateway to explore Asia providing a unique experience and an excellent quality of life.

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